SmartHeart publications


Bustin A., Neji R., Ginami G., Ismail T. F., Rashid I., Botnar R. M. and Prieto C. (2018) Four-minute whole-heart coronary MRA with sub-millimeter isotropic resolution and 100% respiratory scan efficiency. Proceedings of the 5th Meeting of the EUROCMR / SCMR, doi: 10.1002/mrm.27354.

Correia T., Ginami G., Cruz G., Neji R., Rashid I., Botnar RM., Prieto C. (2018) Optimized respiratory-resolved motion-compensated 3D Cartesian coronary MR angiography. Magnetic Resonance in Medicine. doi: 10.1002/mrm.27208.

Puyol-Anton E., Ruijsink B., Langet H.,De Craene M., Schnabel J. A., Piro P., King A. P. and Sinclair M. (2018) Fully automated myocardial strain estimation from cine MRI using convolutional neural networks. IEEE ISBI, 2018, in press.

Oksuz I., Ruijsink B., Puyol-Anton E., Sinclair M., Rueckert D., Schnabel J. A. and King A.P. (2018) Automatic Left Ventricular Outflow Tract Classification for Accurate Cardiac MR Planning. IEEE ISBI, 2018, in press.

Holtackers, R. J., Chiribiri, A., Schneider, T., Higgins, D. M., & Botnar, R. M. (2017). Dark-blood late gadolinium enhancement without additional magnetization preparation. Journal of Cardiovascular Magnetic Resonance, 19, 64. DOI: 10.1186/s12968-017-0372-4. PMCID: PMC5568308. PMID: 28835250

Ginami G., Neji R., Phinikaridou A., Whitaker J., Botnar R. M. and Prieto C. (2018) Simultaneous bright- and black-blood whole-heart MRI for noncontrast enhanced coronary lumen and thrombus visualization. Magn. Reson. Med, 79: 1460–1472. DOI: 10.1002/mrm.26815. PMID: 28722267

Ginami G., Neji R., Rashid I., Chiribiri A., Ismail T. F., Botnar R. M. and Prieto C. (2018) 3D whole-heart phase sensitive inversion recovery CMR for simultaneous black-blood late gadolinium enhancement and bright-blood coronary CMR angiography. J Cardiovasc Magn Reson. 19: 94. DOI: 10.1186/s12968-017-0405-z. PMCID: PMC5702978

Henningsson M., Jouke S., van Ensbergen G. and Botnar R. (2018) Coronary MR Angiography Using Image-Based Respiratory Motion Compensation With Inline Correction and Fixed Gating Efficiency. Magnetic Resonance in Medicine 79:416–422. DOI: 10.1002/mrm.26678. PubMed PMID: 28321900. PMCID: 5763408

Schlemper J., Caballero J., Hajnal J. V., Price A. and Rueckert D. (2017) A Deep Cascade of Convolutional Neural Networks for Dynamic MR Image Reconstruction in IEEE Transactions on Medical Imaging, vol. PP, no. 99, pp. 1-1.
doi: 10.1109/TMI.2017.2760978

Robinson R., Valindria V. V., Bai W., Suzuki H., Matthews P.M., Page C., Rueckert D., and Glocker B. (2017) Automatic Quality Control of Cardiac MRI Segmentation in Large-Scale Population Imaging. In: Descoteaux M., Maier-Hein L., Franz A., Jannin P., Collins D., Duchesne S. (eds) Medical Image Computing and Computer Assisted Intervention − MICCAI 2017. MICCAI 2017. Lecture Notes in Computer Science, vol 10433:720-727. Springer, Cham. doi: 10.1007/978-3-319-66182-7_82

Bai W., Oktay O., Sinclair M., Suzuki H., Rajchl M., Tarroni G., Glocker B., King A., Matthews P. M. and Rueckert D. (2017) Semi-supervised Learning for Network-Based Cardiac MR Image Segmentation. In: Descoteaux M., Maier-Hein L., Franz A., Jannin P., Collins D., Duchesne S. (eds) Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017. MICCAI 2017. Lecture Notes in Computer Science, vol. 10434:253-260. Springer, Cham. doi: 10.1007/978-3-319-66185-8_29

Puyol-Antón E., Sinclair M., Gerber B., Silvia Amzulescu M., Langet H., De Craene M., Aljabar P., Piro P. and King A. P. (2017) A multimodal spatiotemporal cardiac motion atlas from MR and ultrasound data. Medical Image Analysis 40: 96–110. doi: 10.1016/ PubMed PMID: 28646674.

Oktay O., Ferrante E., Kamnitsas K., Heinrich M., Bai W., Caballero J., Guerrero R., Cook S., de Marvao A., Dawes T., O’Regan D., Kainz B., Glocker B. and Rueckert D. (2017) Anatomically Constrained Neural Networks (ACNN): Application to Cardiac Image Enhancement and Segmentation. IEEE Transactions on Medical Imaging ( arXiv:1705.08302).


Selected relevant publications


Henningsson M., Smink J., van Ensbergen G. and Botnar R. (2017) Coronary MR angiography using image-based respiratory motion compensation with inline correction and fixed gating efficiency. Magn Reson Med. 2017 Mar 20. doi: 10.1002/mrm.26678. PubMed PMID: 28321900.

Nordio G., Henningsson M., Chiribiri A., Villa A.D., Schneider T. and Botnar R.M. (2017) 3D myocardial T1 mapping using saturation recovery. J Magn Reson Imaging. 2017 Feb 2. doi: 10.1002/jmri.25575. PubMed PMID: 28152227.

Aung N., Sanghvi M.M., Zemrak F., Fung K., Paiva J.M., Francis J.M., Khanji M.Y., Lukaschuk E., Lee A.M., Carapella V., Kim Y.J., Leeson P., Piechnik S.K. and Neubauer S. (2017) Reference ranges for cardiac structure and function using cardiovascular magnetic resonance (CMR) in Caucasians from the UK Biobank population cohort, J Cardiovasc Magn Reson, doi: 10.1186/s12968-017-0327-9. PubMed PMID: 28178995. PubMed Central PMCID: PMC5304550.

Cruz G., Atkinson D., Henningsson M., Botnar R.M. and Prieto C. (2016) Highly efficient nonrigid motion-corrected 3D whole-heart coronary vessel wall imaging. Magn Reson Med. 2016 May 25. doi: 10.1002/mrm.26274.

Petersen S.E., Matthews P.M., Francis J.M., Robson M.D., Zemrak F., Boubertakh R., Young A.A., Hudson S., Weale P., Garratt S., Collins R., Piechnik S. and Neubauer S. (2016) UK Biobank’s cardiovascular magnetic resonance protocol. J Cardiovasc Magn Reson. 2016 Feb 1;18:8. doi: 10.1186/s12968-016-0227-4. PubMed PMID: 26830817; PubMed Central PMCID: PMC4736703.

Gomez, A., Oktay, O., Rueckert, D., Penney, G. P., Schnabel, J. A., Simpson, J. M. & Pushparajah, K. (2016) Regional Differences in End-Diastolic Volumes between 3D Echo and CMR in HLHS Patients. Frontiers in Pediatrics 4:133. doi: 10.3389/fped.2016.00133. PubMed Central PMCID: PMC5152531.

Schnabel J.A., Heinrich M.P., Papież B.W., Brady J.M. (2016) Advances and challenges in deformable image registration: From image fusion to complex motion modelling. Medical Image Analysis 33: 145-148. doi:

Nezafat M., Henningsson M., Ripley D.P., Dedieu N., Greil G., Greenwood J.P., Börnert P., Plein S., Botnar, R.M. (2016) Coronary MR angiography at 3T: fat suppression versus water-fat separation.  MAGMA. 2016 Oct;29(5):733-8. doi: 10.1007/s10334-016-0550-7. PubMed PMID: 27038934. PubMed Central PMCID: PMC5033991.

Henningsson M., Hussain T., Vieira M.S., Greil G.F., Smink J., Ensbergen G.V., Beck G., Botnar R.M. (2016) Whole-heart coronary MR angiography using image-based navigation for the detection of coronary anomalies in adult patients with congenital heart disease. J Magn Reson Imaging. 2016 Apr;43(4):947-55. doi: 10.1002/jmri.25058. PubMed PMID: 26451972.

Sudlow C., Gallacher J., Allen N., Beral V., Burton P., Danesh J., Downey P., Elliott P., Green J., Landray M., Liu B., Matthews P., Ong G., Pell J., Silman A., Young A., Sprosen T., Peakman T., Collins R. (2015) UK biobank: an open access resource for identifying the causes of a wide range of complex diseases of middle and old age. PLoS Med. 2015 Mar 31;12(3):e1001779. doi: 10.1371/journal.pmed.1001779. PubMed PMID: 25826379; PubMed Central PMCID: PMC4380465.

Aitken A.P., Henningsson M., Botnar R.M., Schaeffter T., Prieto C. (2015) 100% Efficient three-dimensional coronary MR angiography with two-dimensional beat-to-beat translational and bin-to-bin affine motion correction.  Magn Reson Med. 2015 Sep;74(3):756-64. doi: 10.1002/mrm.25460. PubMed PMID: 25236813.

Prieto C., Doneva M., Usman M. Henningsson M., Greil G., Schaeffter T. and Botnar R.M. (2015) Highly efficient respiratory motion compensated free-breathing coronary MRA using golden-step Cartesian acquisition. J Magn Reson Imaging. 2015 Mar;41(3):738-46. doi: 10.1002/jmri.24602. PubMed PMID: 24573992.

Rueckert D. and Schnabel J.A. (2014) Registration and segmentation in medical imaging. Registration and Recognition in Images and Videos, Springer, 532:137-156. doi: 10.1007/978-3-642-44907-9_7.

Petersen S.E., Matthews P.M., Bamberg F., Bluemke D.A., Francis J.M., Friedrich M.G., Leeson P., Nagel E., Plein S., Rademakers F.E., Young A.A., Garratt S., Peakman T., Sellors J., Collins R., Neubauer S. (2013) Imaging in population science: cardiovascular magnetic resonance in 100,000 participants of UK Biobank – rationale, challenges and approaches. J Cardiovasc Magn Reson. 2013 May 28;15:46. doi: 10.1186/1532-429X-15-46. PubMed PMID: 23714095; PubMed Central PMCID: PMC3668194.